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Revision: 4.095. Date: 9/23/2011.
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NeuroExplorer Manual
1
Table of Contents
3
1. Getting Started
9
NeuroExplorer Updates
10
Files Panel
14
Multi Channel Systems Files
20
Neuralynx Files
20
File Import Options
20
1.10. 1D Data Viewer
26
1.11. Analyzing Data
27
1.16. Analysis Templates
33
1.17. Numerical Results
34
1.18. Post-processing
35
1.20. Working with Matlab
37
1.21. Working with Excel
38
1.22. Saving Graphics
39
2. Analysis Reference
40
2.1. Data Types
41
2.1.2. Events
42
2.1.3. Intervals
42
2.1.4. Markers
44
2.1.5. Population Vectors
45
2.1.6. Waveforms
46
Limitations
47
2.2. Data Selection Options
48
2.3. Post-Processing Options
49
2.4. Matlab Options
50
2.5. Excel Options
50
2.7. Cumulative Sum Graphs
52
2.8. Rate Histograms
53
2.10. Autocorrelograms
58
2.11. Perievent Histograms
61
Peak and Trough Statistics
64
2.12. Crosscorrelograms
66
Shift-Predictor Algorithm
71
More on Time Intervals
72
2.14. Rasters
73
2.15. Perievent Rasters
74
2.16. Joint PSTH
77
2.18. Instant Frequency
80
(t[i], t[i] - t[i-1])
81
2.21. Synchrony vs. Time
83
2.22. Trial Bin Counts
85
2.24. Burst Analysis
90
2.26. PSTH Versus Time
95
2.28. Regularity Analysis
99
Algorithm
100
Reference
100
2.29. Place Cell Analysis
101
Summary of Numerical Results
102
2.30. Reverse Correlation
105
2.31. Epoch Counts
108
2.32. Coherence Analysis
110
2.33. Spectrogram Analysis
113
2.34. Perievent Spectrograms
115
2.35. Joint ISI Distribution
117
Parameters
119
3. Working with Graphics
121
3.4. Text Labels
124
3.5. Lines
125
3.6. Rectangles
126
4. Working with 3D Graphics
127
4.2. 3D Graphics Parameters
129
5. Programming with NexScript
133
5.1. Script Variables
135
5.2. File Variables
136
5.3. Expressions
138
5.4. Flow Control
139
Conditional operators
140
5.5. Functions
141
See Also
142
5.5.1.2. GetFileName Function
144
5.5.1.3. OpenFile Function
145
5.5.1.4. CloseFile Function
146
5.5.1.5. ReadLine Function
147
5.5.1.6. WriteLine Function
148
5.5.1.8. NewDocument Function
150
CloseDocument(doc)
151
5.5.1.15. MergeFiles Function
157
5.5.1.16. ReadBinary Function
158
5.5.1.17. FileSeek Function
159
5.5.1.18. SelectFile Function
160
5.5.2.1. GetDocPath Function
162
5.5.2.2. GetDocTitle Function
163
SetDocEndTime(doc, 1200.3)
166
5.5.3.1. GetVarCount Function
169
5.5.3.2. GetVarName Function
170
5.5.3.4. GetVar Function
172
5.5.3.5. DeleteVar Function
173
5.5.3.6. Delete Function
174
5.5.3.8. NewEvent Function
176
5.5.3.9. NewIntEvent Function
177
5.5.3.12. NewContVar Function
180
5.5.4.1. IsSelected Function
183
5.5.4.2. Select Function
184
5.5.4.3. Deselect Function
185
5.5.4.4. SelectVar Function
186
5.5.4.5. DeselectVar Function
187
5.5.4.6. Select Function
188
5.5.4.7. Deselect Function
189
5.5.4.8. SelectAll Function
190
5.5.4.9. DeselectAll Function
191
SelectAllNeurons(doc)
192
EnableRecalcOnSelChange ()
194
5.5.5.1. GetName Function
197
AddTimestamp(eventVar, 1.5)
199
5.5.5.6. AddInterval Function
202
5.5.6. Analysis Functions
203
PrintGraphics(doc)
206
5.5.7.1. GetNumRes Function
217
5.5.8.1. Rename Function
231
5.5.8.2. Join Function
232
5.5.8.3. Sync Function
233
5.5.8.4. NotSync Function
234
5.5.8.5. FirstAfter Function
235
5.5.8.6. FirstNAfter Function
236
5.5.8.7. LastBefore Function
237
"Trials"))
238
5.5.8.11. SelectEven Function
241
5.5.8.12. SelectOdd Function
242
5.5.8.13. ISIFilter Function
243
5.5.8.22. IntOr Function
252
5.5.8.23. IntAnd Function
253
5.5.8.24. IntSize Function
254
5.5.8.25. IntFind Function
255
5.5.8.27. Shift Function
257
5.5.8.28. NthAfter Function
258
5.5.9. Matlab Functions
263
SendSelectedVarsToMatlab(doc)
264
5.5.10. Excel Functions
270
CloseExcelFile(excelFilePath)
272
5.5.12.1. RunScript Function
277
5.5.12.2. Sleep Function
278
5.5.13. Math Functions
279
5.5.13.1. seed Function
281
5.5.13.2. expo Function
282
5.5.13.3. floor Function
283
5.5.13.4. ceil Function
284
5.5.13.5. round Function
285
5.5.13.6. abs Function
286
5.5.13.7. sqrt Function
287
5.5.13.8. pow Function
288
5.5.13.9. exp Function
289
5.5.13.10. min Function
290
5.5.13.11. max Function
291
5.5.13.12. log Function
292
5.5.13.13. sin Function
293
5.5.13.14. cos Function
294
5.5.13.15. tan Function
295
5.5.13.16. acos Function
296
5.5.13.17. asin Function
297
5.5.13.18. atan Function
298
5.5.13.19. RoundToTS Function
299
% x now equals to 1
303
5.5.13.25. GetBit Function
305
5.5.14. String Functions
306
5.5.14.1. Left Function
307
5.5.14.2. Mid Function
308
5.5.14.3. Right Function
309
5.5.14.4. Find Function
310
5.5.14.5. StrLength Function
311
5.5.14.6. NumToStr Function
312
5.5.14.7. StrToNum Function
313
% numFields is now equal to 4
314
5.5.14.10. CharToNum Function
316
5.5.14.11. NumToChar Function
317
5.5.15. Debug Functions
318
5.5.15.1. Trace Function
319
5.5.15.2. MsgBox Function
320
6. COM/ActiveX Interfaces
321
6.1. Application
322
6.1.2. DocumentCount Property
324
6.1.3. Version Property
325
6.1.4. Visible Property
326
6.1.5. OpenDocument Method
327
6.1.6. Document Medhod
328
6.1.7. Sleep Method
329
6.1.8. RunNexScript Method
330
6.2. Document
332
6.2.1. Path Property
334
6.2.2. FileName Property
335
6.2.3. Comment Property
336
6.2.5. StartTime Property
338
6.2.6. EndTime Property
339
6.2.7. VariableCount Property
340
6.2.8. NeuronCount Property
341
6.2.9. EventCount Property
342
6.2.11. MarkerCount Property
344
6.2.12. WaveCount Property
345
6.2.14. Variable Method
347
6.2.15. Neuron Method
348
6.2.16. Event Method
349
6.2.17. Interval Method
350
6.2.18. Marker Method
351
6.2.19. Wave Method
352
6.2.20. Continuous Method
353
6.2.21. DeselectAll Method
354
6.2.24. ApplyTemplate Method
357
6.2.26. Close Method
359
6.3. Variable
360
6.3.1. Name Property
361
6.3.3. Timestamps Method
363
6.3.4. IntervalStarts Method
364
6.3.5. IntervalEnds Method
365
6.3.7. FragmentCounts Method
367
6.3.9. MarkerValues Method
369
6.3.10. WaveformValues Method
370
6.3.11. Select Method
371
6.3.12. Deselect Method
372
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